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BMCBI
2011
12 years 12 months ago
iPhy: an integrated phylogenetic workbench for supermatrix analyses
Background: The increasing availability of molecular sequence data means that the accuracy of future phylogenetic studies is likely to by limited by systematic bias and taxon choi...
Martin O. Jones, Georgios D. Koutsovoulos, Mark L....
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 6 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
HICSS
2007
IEEE
187views Biometrics» more  HICSS 2007»
13 years 11 months ago
A Service-Oriented Data Integration and Analysis Environment for In Silico Experiments and Bioinformatics Research
In this paper, we present a practical experiment of building a service-oriented system upon current web services technologies and bioinformatics middleware. The system allows scie...
Xiaorong Xiang, Gregory R. Madey, Jeanne Romero-Se...
BMCBI
2010
143views more  BMCBI 2010»
13 years 5 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
DEXAW
2003
IEEE
131views Database» more  DEXAW 2003»
13 years 10 months ago
Privacy and Trusted Computing
This paper examines a model of trusted computing wherein a computing platform is able to make assertions about its current software configuration that may be trusted by the user ...
Juan Manuel González Nieto, Ed Dawson, Eiji...