54 search results - page 3 / 11 » Linear Time Algorithm for Parsing RNA Secondary Structure |
SOFSEM
2010
Springer
14 years 2 months ago
2010
Springer
An arc-annotated string is a string of characters, called bases, augmented with a set of pairs, called arcs, each connecting two bases. Given arc-annotated strings P and Q the arc-...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
CPM
2004
Springer
13 years 10 months ago
2004
Springer
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
APBC
2004
13 years 6 months ago
2004
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
JCB
2002
13 years 5 months ago
2002
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...