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» Link Discovery in Graphs Derived from Biological Databases
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KDD
2008
ACM
138views Data Mining» more  KDD 2008»
14 years 6 months ago
A visual-analytic toolkit for dynamic interaction graphs
In this article we describe a visual-analytic tool for the interrogation of evolving interaction network data such as those found in social, bibliometric, WWW and biological appli...
Xintian Yang, Sitaram Asur, Srinivasan Parthasarat...
NAR
2008
191views more  NAR 2008»
13 years 5 months ago
The BioGRID Interaction Database: 2008 update
The Biological General Repository for Interaction Datasets (BioGRID) database (http://www. thebiogrid.org) was developed to house and distribute collections of protein and genetic...
Bobby-Joe Breitkreutz, Chris Stark, Teresa Reguly,...
ISMB
2000
13 years 7 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
ICDE
2012
IEEE
240views Database» more  ICDE 2012»
11 years 8 months ago
Ego-centric Graph Pattern Census
—There is increasing interest in analyzing networks of all types including social, biological, sensor, computer, and transportation networks. Broadly speaking, we may be interest...
Walaa Eldin Moustafa, Amol Deshpande, Lise Getoor
BMCBI
2005
201views more  BMCBI 2005»
13 years 5 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota