17 search results - page 3 / 4 » Local Search Heuristic for Rigid Protein Docking |
JCC
2008
13 years 5 months ago
2008
: We adapt a combinatorial optimization algorithm, extremal optimization (EO), for the search problem in computational protein design. This algorithm takes advantage of the knowled...
SCFBM
2008
13 years 4 months ago
2008
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
CIKM
2008
Springer
13 years 7 months ago
2008
Springer
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
BMCBI
2007
13 years 5 months ago
2007
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
JBI
2004
13 years 6 months ago
2004
Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus s...