36 search results - page 1 / 8 » Local sequence alignments with monotonic gap penalties |
BIOINFORMATICS
1999
13 years 5 months ago
1999
AINA
2008
IEEE
13 years 12 months ago
2008
IEEE
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
JCB
2007
13 years 5 months ago
2007
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...
BIBE
2005
IEEE
13 years 11 months ago
2005
IEEE
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
BMCBI
2005
13 years 5 months ago
2005
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...