In this paper, we introduce localized homology, a theory for finding local geometric descriptions for topological attributes. Given a space and a cover of subspaces, we construct...
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
In this paper, we present a series of distributed algorithms for coverage verification in sensor networks with no location information. We demonstrate how, in the absence of locali...
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...