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SMI
2007
IEEE
129views Image Analysis» more  SMI 2007»
13 years 11 months ago
Localized Homology
In this paper, we introduce localized homology, a theory for finding local geometric descriptions for topological attributes. Given a space and a cover of subspaces, we construct...
Afra Zomorodian, Gunnar Carlsson
NAR
2007
152views more  NAR 2007»
13 years 4 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
BMCBI
2006
120views more  BMCBI 2006»
13 years 4 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
CDC
2008
IEEE
166views Control Systems» more  CDC 2008»
13 years 6 months ago
Distributed coverage verification in sensor networks without location information
In this paper, we present a series of distributed algorithms for coverage verification in sensor networks with no location information. We demonstrate how, in the absence of locali...
Alireza Tahbaz-Salehi, Ali Jadbabaie
BMCBI
2008
106views more  BMCBI 2008»
13 years 4 months ago
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...