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    » MSAID: multiple sequence alignment based on a measure of inf...
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    CANDC
    2005
    ACM
    102views Emerging Technology» more  CANDC 2005»
    MSAID: multiple sequence alignment based on a measure of information discrepancy
    13 years 4 months ago
    MSAID: multiple sequence alignment based on a measure of information discrepancy
    Download  madis1.iss.ac.cn
    We propose an algorithm of global multiple sequence alignment that is based on a measure of what we call information discrepancy. The algorithm follows a progressive alignment ite...
    Min Zhang, Weiwu Fang, Junhua Zhang, Zhongxian Chi
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    RECOMB
    2003
    Springer
    123views Computational Biology» more  RECOMB 2003»
    A multi-expert system for the automatic detection of protein domains from sequence information
    14 years 4 months ago
    A multi-expert system for the automatic detection of protein domains from sequence information
    Download  www.cbcb.umd.edu
    We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
    Niranjan Nagarajan, Golan Yona
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    BMCBI
    2004
    177views more  BMCBI 2004»
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    13 years 4 months ago
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    Download  www.biomedcentral.com
    Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
    Andrew F. Neuwald, Jun S. Liu
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    ALMOB
    2008
    85views more  ALMOB 2008»
    Noisy: Identification of problematic columns in multiple sequence alignments
    13 years 4 months ago
    Noisy: Identification of problematic columns in multiple sequence alignments
    Download  www.santafe.edu
    Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
    Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
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    BMCBI
    2010
    177views more  BMCBI 2010»
    Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
    13 years 4 months ago
    Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
    Download  www.biomedcentral.com
    Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
    Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman
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