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NAR
2010
122views more  NAR 2010»
13 years 3 days ago
ELM: the status of the 2010 eukaryotic linear motif resource
Linear motifs are short segments of multidomain proteins that provide regulatory functions independently of protein tertiary structure. Much of intracellular signalling passes thr...
Cathryn M. Gould, Francesca Diella, Allegra Via, P...
BMCBI
2011
12 years 9 months ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
PPOPP
2012
ACM
12 years 27 days ago
Better speedups using simpler parallel programming for graph connectivity and biconnectivity
Speedups demonstrated for finding the biconnected components of a graph: 9x to 33x on the Explicit Multi-Threading (XMT) many-core computing platform relative to the best serial ...
James A. Edwards, Uzi Vishkin
ICDCS
2012
IEEE
11 years 7 months ago
Scalable Name Lookup in NDN Using Effective Name Component Encoding
—Name-based route lookup is a key function for Named Data Networking (NDN). The NDN names are hierarchical and have variable and unbounded lengths, which are much longer than IPv...
Yi Wang, Keqiang He, Huichen Dai, Wei Meng, Junche...
BMCBI
2010
113views more  BMCBI 2010»
13 years 5 months ago
Improving performance of mammalian microRNA target prediction
Background: MicroRNAs (miRNAs) are single-stranded non-coding RNAs known to regulate a wide range of cellular processes by silencing the gene expression at the protein and/or mRNA...
Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yu...