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FOCS
2008
IEEE
13 years 11 months ago
Embeddings of Topological Graphs: Lossy Invariants, Linearization, and 2-Sums
We study the properties of embeddings, multicommodity flows, and sparse cuts in minor-closed families of graphs which are also closed under 2-sums; this includes planar graphs, g...
Amit Chakrabarti, Alexander Jaffe, James R. Lee, J...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
RANDOM
2001
Springer
13 years 9 months ago
Near-optimum Universal Graphs for Graphs with Bounded Degrees
d Abstract) Noga Alon1, , Michael Capalbo2, , Yoshiharu Kohayakawa3, , Vojtˇech R¨odl4,† , Andrzej Ruci´nski5,‡ , and Endre Szemer´edi6,§ 1 Department of Mathematics, Raym...
Noga Alon, Michael R. Capalbo, Yoshiharu Kohayakaw...
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
13 years 9 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...
TCBB
2008
117views more  TCBB 2008»
13 years 5 months ago
Consensus Genetic Maps as Median Orders from Inconsistent Sources
A genetic map is an ordering of genetic markers calculated from a population of known lineage. Although, traditionally, a map has been generated from a single population for each s...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...