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    BMCBI
    2005
    94views more  BMCBI 2005»
    Measuring similarities between transcription factor binding sites
    13 years 4 months ago
    Measuring similarities between transcription factor binding sites
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    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    BMCBI
    2008
    259views more  BMCBI 2008»
    DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
    13 years 4 months ago
    DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
    Download  www.biomedcentral.com
    Background: A typical step in the analysis of gene expression data is the determination of clusters of genes that exhibit similar expression patterns. Researchers are confronted w...
    Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J....
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    BMCBI
    2010
    108views more  BMCBI 2010»
    An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
    13 years 4 months ago
    An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
    Download  www.biomedcentral.com
    Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
    Fernando Garcia-Alcalde, Armando Blanco, Adrian J....
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    CSB
    2005
    IEEE
    125views Bioinformatics» more  CSB 2005»
    Discriminative Discovery of Transcription Factor Binding Sites from Location Data
    13 years 10 months ago
    Discriminative Discovery of Transcription Factor Binding Sites from Location Data
    Download  conferences.computer.org
    Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
    Yuji Kawada, Yasubumi Sakakibara
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    BIOINFORMATICS
    2005
    65views more  BIOINFORMATICS 2005»
    Similarity of position frequency matrices for transcription factor binding sites
    13 years 4 months ago
    Similarity of position frequency matrices for transcription factor binding sites
    Download  rulai.cshl.edu
    Dustin E. Schones, Pavel Sumazin, Michael Q. Zhang
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