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    IJBRA
    2006
    111views more  IJBRA 2006»
    Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
    13 years 4 months ago
    Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
    Download  www.uga.edu
    : Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
    Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
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    CSB
    2004
    IEEE
    208views Bioinformatics» more  CSB 2004»
    Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
    13 years 8 months ago
    Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
    Download  conferences.computer.org
    Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
    Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
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    BMCBI
    2008
    145views more  BMCBI 2008»
    Directed acyclic graph kernels for structural RNA analysis
    13 years 4 months ago
    Directed acyclic graph kernels for structural RNA analysis
    Download  www.biomedcentral.com
    Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
    Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
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    BMCBI
    2005
    162views more  BMCBI 2005»
    Accelerated probabilistic inference of RNA structure evolution
    13 years 4 months ago
    Accelerated probabilistic inference of RNA structure evolution
    Download  biowiki.org
    Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
    Ian Holmes
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