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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 5 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
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    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2010
    240views more  BMCBI 2010»
    TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs
    13 years 5 months ago
    TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs
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    Background: MicroRNAs (miRNAs) are a class of important gene regulators. The number of identified miRNAs has been increasing dramatically in recent years. An emerging major challe...
    Ming Lu, Bing Shi, Juan Wang, Qun Cao, Qinghua Cui
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    BMCBI
    2005
    201views more  BMCBI 2005»
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    13 years 5 months ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
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    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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    BMCBI
    2008
    136views more  BMCBI 2008»
    GPAT: Retrieval of genomic annotation from large genomic position datasets
    13 years 5 months ago
    GPAT: Retrieval of genomic annotation from large genomic position datasets
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    Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
    Arnaud Krebs, Mattia Frontini, Làszlò...
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    ECCB
    2005
    IEEE
    191views Computational Biology» more  ECCB 2005»
    A query language for biological networks
    13 years 11 months ago
    A query language for biological networks
    Download  www.informatik.hu-berlin.de
    Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
    Ulf Leser
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