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» Metabolic networks analysis using convex optimization
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CDC
2009
IEEE
141views Control Systems» more  CDC 2009»
13 years 3 months ago
Cell design in bacteria as a convex optimization problem
In this paper, we investigate the cell design of bacteria during the exponential growth. To this purpose, we propose to formulate the problem as a non differentiable convex optimiz...
Anne Goelzer, Vincent Fromion, Gérard Scorl...
BMCBI
2006
102views more  BMCBI 2006»
13 years 5 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
GCB
2004
Springer
101views Biometrics» more  GCB 2004»
13 years 11 months ago
Kleene's Theorem and the Solution of Metabolic Carbon Labeling Systems
: Carbon Labeling Systems (CLS) are large equation systems that describe the dynamics of labeled carbon atoms in a metabolic network. The rapid solution of these systems is the alg...
Nicole Isermann, Michael Weitzel, Wolfgang Wiecher...
AB
2007
Springer
13 years 11 months ago
Algorithmic Algebraic Model Checking IV: Characterization of Metabolic Networks
A series of papers, all under the title of Algorithmic Algebraic Model Checking (AAMC), has sought to combine techniques from algorithmic algebra, model checking and dynamical syst...
Venkatesh Mysore, Bud Mishra
BMCBI
2006
127views more  BMCBI 2006»
13 years 5 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...