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» Methods for Random Modularization of Biological Networks
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BMCBI
2010
193views more  BMCBI 2010»
13 years 4 months ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...
AAAI
2012
11 years 7 months ago
Robust Cuts Over Time: Combatting the Spread of Invasive Species with Unreliable Biological Control
Widespread accounts of the harmful effects of invasive species have stimulated both practical and theoretical studies on how the spread of these destructive agents can be containe...
Gwen Spencer
ALENEX
2003
137views Algorithms» more  ALENEX 2003»
13 years 6 months ago
The Markov Chain Simulation Method for Generating Connected Power Law Random Graphs
Graph models for real-world complex networks such as the Internet, the WWW and biological networks are necessary for analytic and simulation-based studies of network protocols, al...
Christos Gkantsidis, Milena Mihail, Ellen W. Zegur...
BMCBI
2010
142views more  BMCBI 2010»
13 years 4 months ago
Discover Protein Complexes in Protein-Protein Interaction Networks Using Parametric Local Modularity
Background: Recent advances in proteomic technologies have enabled us to create detailed protein-protein interaction maps in multiple species and in both normal and diseased cells...
Jongkwang Kim, Kai Tan
RECOMB
2006
Springer
14 years 5 months ago
Identification and Evaluation of Functional Modules in Gene Co-expression Networks
Abstract. Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. In this paper, we introduce a simple method to construct ge...
Jianhua Ruan, Weixiong Zhang