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BMCBI
2008
163views more  BMCBI 2008»
13 years 5 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
EKAW
2006
Springer
13 years 8 months ago
Semantic Metrics
In the context of the Semantic Web, many ontology-related operations, e.g. ontology ranking, segmentation, alignment, articulation, reuse, evaluation, can reduced to one fundamenta...
Bo Hu, Yannis Kalfoglou, Harith Alani, David Duppl...
JBI
2007
120views Bioinformatics» more  JBI 2007»
13 years 4 months ago
Measures of semantic similarity and relatedness in the biomedical domain
Measures of semantic similarity between concepts are widely used in Natural Language Processing. In this article, we show how six existing domain-independent measures can be adapt...
Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Pa...
DASFAA
2007
IEEE
240views Database» more  DASFAA 2007»
13 years 11 months ago
A Comparative Study of Ontology Based Term Similarity Measures on PubMed Document Clustering
Recent research shows that ontology as background knowledge can improve document clustering quality with its concept hierarchy knowledge. Previous studies take term semantic simila...
Xiaodan Zhang, Liping Jing, Xiaohua Hu, Michael K....
BIBE
2004
IEEE
179views Bioinformatics» more  BIBE 2004»
13 years 8 months ago
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study
This research explores the feasibility of semantic similarity approaches to supporting predictive tasks in functional genomics. It aims to establish potential relationships betwee...
Francisco Azuaje, Olivier Bodenreider