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BMCBI
2008
184views more  BMCBI 2008»
13 years 5 months ago
Integrating protein-protein interactions and text mining for protein function prediction
Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...
IDEAL
2007
Springer
13 years 11 months ago
Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning
Abstract. Much work has been done to identify species-specific proteins in sequenced genomes and hence to determine their function. We assumed that such proteins have specific ph...
Ali Al-Shahib, David Gilbert, Rainer Breitling
EMNLP
2009
13 years 3 months ago
A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora
Because of the importance of proteinprotein interaction (PPI) extraction from text, many corpora have been proposed with slightly differing definitions of proteins and PPI. Since ...
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun-i...
ICDM
2008
IEEE
136views Data Mining» more  ICDM 2008»
14 years 2 hour ago
Generalized Framework for Syntax-Based Relation Mining
Supervised approaches to Data Mining are particularly appealing as they allow for the extraction of complex relations from data objects. In order to facilitate their application i...
Bonaventura Coppola, Alessandro Moschitti, Daniele...
PR
2006
110views more  PR 2006»
13 years 5 months ago
Classifying protein sequences using hydropathy blocks
The annotation of proteins can be achieved by classifying the protein of interest into a certain known protein family to induce its functional and structural features. This paper ...
De-Shuang Huang, Xing-Ming Zhao, Guang-Bin Huang, ...