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» Mining protein networks for synthetic genetic interactions
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SAC
2006
ACM
13 years 11 months ago
Mining and analyzing the topological structure of protein-protein interaction networks
We report a comprehensive evaluation of the topological structure of protein-protein interaction (PPI) networks by mining and analyzing graphs constructed from the publicly availa...
Daniel Duanqing Wu, Xiaohua Hu
BIBE
2010
IEEE
194views Bioinformatics» more  BIBE 2010»
13 years 2 months ago
Improved Immune Genetic Algorithm for Clustering Protein-Protein Interaction Network
Hamid Ravaee, Ali Masoudi-Nejad, Saeed Omidi, Ali ...
CDC
2009
IEEE
124views Control Systems» more  CDC 2009»
13 years 10 months ago
Design of insulating devices for in vitro synthetic circuits
— This paper describes a synthetic in vitro genetic circuit programmed to work as an insulating device. This circuit is composed of nucleic acids, which can be designed to intera...
Elisa Franco, Domitilla Del Vecchio, Richard M. Mu...
ICDM
2009
IEEE
152views Data Mining» more  ICDM 2009»
13 years 12 months ago
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks
Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereb...
Peter Boyen, Frank Neven, Dries Van Dyck, Aalt-Jan...
SSDBM
2010
IEEE
185views Database» more  SSDBM 2010»
13 years 3 months ago
DESSIN: Mining Dense Subgraph Patterns in a Single Graph
Currently, a large amount of data can be best represented as graphs, e.g., social networks, protein interaction networks, etc. The analysis of these networks is an urgent research ...
Shirong Li, Shijie Zhang, Jiong Yang