Background: Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) ...
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan ...
Inductive Logic Programming (ILP) systems have been successfully applied to solve complex problems in bioinformatics by viewing them as binary classification tasks. It remains an...
Huma Lodhi, Stephen Muggleton, Michael J. E. Stern...
Text mining techniques have been proposed for extracting protein names and their interactions. First, we have made improvements on existing methods for handling single word protein...
Kiho Hong, Junhyung Park, Jihoon Yang, Sungyong Pa...
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...
In this paper we define the notion of causal chains. Causal chains are a particular kind of sequential patterns that reflect causality relations according to background knowledge....