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» Modeling and comparing the organization of circular genomes
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NAR
2007
210views more  NAR 2007»
13 years 4 months ago
MIPSPlantsDB - plant database resource for integrative and comparative plant genome research
Genome-oriented plant research delivers rapidly increasing amount of plant genome data. Comprehensive and structured information resources are required to structure and communicat...
Manuel Spannagl, Octave Noubibou, Dirk Haase, Li Y...
GECCO
2000
Springer
123views Optimization» more  GECCO 2000»
13 years 8 months ago
Genomic computing: explanatory modelling for functional genomics
Many newly discovered genes are of unknown function. DNA microarrays are a method for determining the expression levels of all genes in an organism for which a complete genome seq...
Richard J. Gilbert, Jem J. Rowland, Douglas B. Kel...
SPIRE
2010
Springer
13 years 2 months ago
Identifying SNPs without a Reference Genome by Comparing Raw Reads
Next generation sequencing (NGS) technologies are being applied to many fields of biology, notably to survey the polymorphism across individuals of a species. However, while single...
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, ...
BMCBI
2006
124views more  BMCBI 2006»
13 years 4 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
BMCBI
2010
133views more  BMCBI 2010»
13 years 4 months ago
Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction
Background: With the rapid expansion of DNA sequencing databases, it is now feasible to identify relevant information from prior sequencing projects and completed genomes and appl...
Lance E. Palmer, Mathäus Dejori, Randall A. B...