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» Modeling and comparing the organization of circular genomes
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BMCBI
2008
138views more  BMCBI 2008»
13 years 5 months ago
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions
Background: The power of haplotype-based methods for association studies, identification of regions under selection, and ancestral inference, is well-established for diploid organ...
Shu-Yi Su, Jonathan White, David J. Balding, Lachl...
BMCBI
2011
13 years 8 days ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
WABI
2001
Springer
138views Bioinformatics» more  WABI 2001»
13 years 9 months ago
Algorithms for Finding Gene Clusters
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
Steffen Heber, Jens Stoye
SASO
2008
IEEE
13 years 11 months ago
Self-Organized Synchronization in Wireless Network
We investigate periodic time synchronization of networks without centralized control, which can be modeled as a problem of aligning local variables taking values on a circle. Sync...
Jiang Yu, Olav Tirkkonen
NAR
2010
174views more  NAR 2010»
13 years 13 hour ago
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genom...
Hee Shin Kim, Terence Murphy, Jing Xia, Doina Cara...