23 search results - page 1 / 5 » Modeling dependencies in protein-DNA binding sites |
RECOMB
2003
Springer
14 years 5 months ago
2003
Springer
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
CIBCB
2007
IEEE
13 years 11 months ago
2007
IEEE
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
RECOMB
2007
Springer
14 years 5 months ago
2007
Springer
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
BMCBI
2010
13 years 5 months ago
2010
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
BMCBI
2005
13 years 4 months ago
2005
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...