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» Modeling splice sites with Bayes networks
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BIOINFORMATICS
2000
81views more  BIOINFORMATICS 2000»
13 years 5 months ago
Modeling splice sites with Bayes networks
Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif
CIBB
2008
13 years 7 months ago
Splice Site Prediction Using Artificial Neural Networks
A system for utilizing an artificial neural network to predict splice sites in genes has been studied. The neural network uses a sliding window of nucleotides over a gene and predi...
Øystein Johansen, Tom Ryen, Trygve Eftest&o...
BMCBI
2007
102views more  BMCBI 2007»
13 years 5 months ago
Multivariate Analysis and Visualization of Splicing Correlations in Single-Gene Transcriptomes
Background: RNA metabolism, through 'combinatorial splicing', can generate enormous structural diversity in the proteome. Alternative domains may interact, however, with...
Mark C. Emerick, Giovanni Parmigiani, William S. A...
BMCBI
2010
152views more  BMCBI 2010»
13 years 5 months ago
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
Background: One of the challenges of bioinformatics remains the recognition of short signal sequences in genomic DNA such as donor or acceptor splice sites, splicing enhancers or ...
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
BMCBI
2006
116views more  BMCBI 2006»
13 years 5 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...