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    » Multiple Alignment of Biological Networks: A Flexible Approa...
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    NAR
    2006
    129views more  NAR 2006»
    AliWABA: alignment on the web through an A-Bruijn approach
    13 years 5 months ago
    AliWABA: alignment on the web through an A-Bruijn approach
    Download  www.cs.brown.edu
    Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
    Neil C. Jones, Degui Zhi, Benjamin J. Raphael
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    COCOA
    2007
    Springer
    130views Discrete Geometry» more  COCOA 2007»
    A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem
    13 years 11 months ago
    A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem
    Download  www.mpi-inf.mpg.de
    Abstract. We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational biology. The upper bou...
    Ernst Althaus, Stefan Canzar
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    BIB
    2006
    141views more  BIB 2006»
    Statistical significance in biological sequence analysis
    13 years 5 months ago
    Statistical significance in biological sequence analysis
    Download  opal.biology.gatech.edu
    One of the major goals of computational sequence analysis is to find sequence similarities, which could serve as evidence of structural and functional conservation, as well as of ...
    Alexander Yu. Mitrophanov, Mark Borodovsky
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    ALMOB
    2006
    106views more  ALMOB 2006»
    Multiple sequence alignment with user-defined anchor points
    13 years 5 months ago
    Multiple sequence alignment with user-defined anchor points
    Download  webdoc.sub.gwdg.de
    Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
    Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
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    ISMB
    1994
    125views Computational Biology» more  ISMB 1994»
    Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites
    13 years 6 months ago
    Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites
    Download  www.aaai.org
    Weuse a quantitative definition of specificity to developa neural networkfor the identification of commonprotein binding sites in a collection of unaligned DNAfragments. Wedemonst...
    John M. Heumann, Alan S. Lapedes, Gary D. Stormo
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