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» NUPACK: Analysis and design of nucleic acid systems
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JCC
2011
87views more  JCC 2011»
12 years 11 months ago
NUPACK: Analysis and design of nucleic acid systems
: The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables...
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois,...
BIOINFORMATICS
2007
107views more  BIOINFORMATICS 2007»
13 years 4 months ago
SwS: a solvation web service for nucleic acids
Summary: SwS, based on a statistical analysis of crystallographic structures deposited in the NDB, is designed to provide an exhaustive overview of the solvation of nucleic acid s...
Pascal Auffinger, Yaser Hashem
BMCBI
2010
103views more  BMCBI 2010»
13 years 4 months ago
Nonparametric methods for the analysis of single-color pathogen microarrays
Background: The analysis of oligonucleotide microarray data in pathogen surveillance and discovery is a challenging task. Target template concentration, nucleic acid integrity, an...
Omar J. Jabado, Sean Conlan, P. Lan Quan, Jeffrey ...
BMCBI
2005
118views more  BMCBI 2005»
13 years 4 months ago
Variation in structural location and amino acid conservation of functional sites in protein domain families
Background: The functional sites of a protein present important information for determining its cellular function and are fundamental in drug design. Accordingly, accurate methods...
Birgit Pils, Richard R. Copley, Jörg Schultz
CDC
2009
IEEE
124views Control Systems» more  CDC 2009»
13 years 9 months ago
Design of insulating devices for in vitro synthetic circuits
— This paper describes a synthetic in vitro genetic circuit programmed to work as an insulating device. This circuit is composed of nucleic acids, which can be designed to intera...
Elisa Franco, Domitilla Del Vecchio, Richard M. Mu...