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DAM
2010
112views more  DAM 2010»
13 years 5 months ago
New results on optimizing rooted triplets consistency
Abstract. A set of phylogenetic trees with overlapping leaf sets is consistent if it can be merged without conflicts into a supertree. In this paper, we study the polynomial-time a...
Jaroslaw Byrka, Sylvain Guillemot, Jesper Jansson
IJCAI
2001
13 years 6 months ago
Balance and Filtering in Structured Satisfiable Problems
New methods to generate hard random problem instances have driven progress on algorithms for deduction and constraint satisfaction. Recently Achlioptas et al. (AAAI 2000) introduc...
Henry A. Kautz, Yongshao Ruan, Dimitris Achlioptas...
BMCBI
2008
86views more  BMCBI 2008»
13 years 5 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
BMCBI
2007
163views more  BMCBI 2007»
13 years 5 months ago
Strainer: software for analysis of population variation in community genomic datasets
Background: Metagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will...
John M. Eppley, Gene W. Tyson, Wayne M. Getz, Jill...
BIBE
2005
IEEE
13 years 10 months ago
Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia
We introduce a new ensemble method based on decision tree to discover significant and diversified rules for subtype classification of childhood acute lymphoblastic leukemia, a ...
Jinyan Li, Huiqing Liu, Ling Li