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IPPS
2007
IEEE
13 years 11 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
BMCBI
2006
179views more  BMCBI 2006»
13 years 5 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
INFOCOM
2010
IEEE
13 years 3 months ago
Cooperative Resource Management in Cognitive WiMAX with Femto Cells
Abstract—WiMAX with femto cells is a cost-effective nextgeneration broadband wireless communication system. Cognitive Radio (CR) has recently emerged as a promising technology to...
Jin Jin, Baochun Li
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
13 years 11 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
IPPS
2010
IEEE
13 years 3 months ago
Acceleration of spiking neural networks in emerging multi-core and GPU architectures
Recently, there has been strong interest in large-scale simulations of biological spiking neural networks (SNN) to model the human brain mechanisms and capture its inference capabi...
Mohammad A. Bhuiyan, Vivek K. Pallipuram, Melissa ...