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» On Complexity Measures for Biological Sequences
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CSB
2004
IEEE
105views Bioinformatics» more  CSB 2004»
13 years 8 months ago
On Complexity Measures for Biological Sequences
Fei Nan, Donald A. Adjeroh
TIT
2010
122views Education» more  TIT 2010»
12 years 11 months ago
Biological information as set-based complexity
The significant and meaningful fraction of all the potential information residing in the molecules and structures of living systems is unknown. Sets of random molecular sequences o...
David J. Galas, Matti Nykter, Gregory W. Carter, N...
BIOCOMP
2007
13 years 6 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
BMCBI
2007
128views more  BMCBI 2007»
13 years 5 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
CANDC
2000
ACM
13 years 4 months ago
Sequence Complexity for Biological Sequence Analysis
A new statistical model for DNA considers a sequence to be a mixture of regions with little structure and regions that are approximate repeats of other subsequences, i.e. instance...
Lloyd Allison, Linda Stern, Timothy Edgoose, Trevo...