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» On Sequence Prediction for Arbitrary Measures
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CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
13 years 8 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
BMCBI
2010
109views more  BMCBI 2010»
13 years 5 months ago
Pripper: prediction of caspase cleavage sites from whole proteomes
Background: Caspases are a family of proteases that have central functions in programmed cell death (apoptosis) and inflammation. Caspases mediate their effects through aspartate-...
Mirva Piippo, Niina Lietzén, Olli Nevalaine...
CORR
2010
Springer
62views Education» more  CORR 2010»
13 years 5 months ago
Sequence prediction in realizable and non-realizable cases
A sequence x1, . . . , xn, . . . of discrete-valued observations is generated according to some unknown probabilistic law (measure)
Daniil Ryabko
ICIP
2009
IEEE
14 years 6 months ago
Pre-fetching Based On Video Analysis For Interactive Region-of-interest Streaming Of Soccer Sequences
We consider a video streaming system in which the user can interactively watch an arbitrary region of a high-spatial-resolution scene. Region-of-interest (RoI) prediction helps pr...
JCB
2008
75views more  JCB 2008»
13 years 4 months ago
New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
We define new measures of sequence similarity for oligonucleotide probe design. These new measures incorporate the nearest neighbor k-stem motifs in their definition, but can be e...
Anthony J. Macula, Alexander Schliep, Morgan A. Bi...