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    BIOCOMP
    2006
    233views Bioinformatics» more  BIOCOMP 2006»
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
    13 years 6 months ago
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
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    Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
    Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
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    BMCBI
    2007
    164views more  BMCBI 2007»
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
    13 years 4 months ago
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
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    Background: The regulation of gene expression is achieved through gene regulatory networks (GRNs) in which collections of genes interact with one another and other substances in a...
    Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping G...
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    ACSC
    2009
    IEEE
    204views Theoretical Computer Science» more  ACSC 2009»
    Inference of Gene Expression Networks Using Memetic Gene Expression Programming
    13 years 11 months ago
    Inference of Gene Expression Networks Using Memetic Gene Expression Programming
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    In this paper we aim to infer a model of genetic networks from time series data of gene expression profiles by using a new gene expression programming algorithm. Gene expression n...
    Armita Zarnegar, Peter Vamplew, Andrew Stranieri
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    BMCBI
    2008
    201views more  BMCBI 2008»
    A copula method for modeling directional dependence of genes
    13 years 4 months ago
    A copula method for modeling directional dependence of genes
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    Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
    Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
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    FORMATS
    2007
    Springer
    89views Formal Methods» more  FORMATS 2007»
    On Timed Models of Gene Networks
    13 years 11 months ago
    On Timed Models of Gene Networks
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    Abstract. We present a systematic translation from timed models of genetic regulatory networks into products of timed automata to which one can apply verification tools in order l...
    Grégory Batt, Ramzi Ben Salah, Oded Maler
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