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» On computational properties of chains of recurrences
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BMCBI
2007
98views more  BMCBI 2007»
13 years 6 months ago
Duration learning for analysis of nanopore ionic current blockades
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties, with potential implications ...
Alexander G. Churbanov, Carl Baribault, Stephen Wi...
JCB
2008
159views more  JCB 2008»
13 years 6 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
BMCBI
2004
265views more  BMCBI 2004»
13 years 6 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...
PVLDB
2008
107views more  PVLDB 2008»
13 years 5 months ago
Finding relevant patterns in bursty sequences
Sequence data is ubiquitous and finding frequent sequences in a large database is one of the most common problems when analyzing sequence data. Unfortunately many sources of seque...
Alexander Lachmann, Mirek Riedewald
SIAMIS
2010
141views more  SIAMIS 2010»
13 years 28 days ago
Optimization by Stochastic Continuation
Simulated annealing (SA) and deterministic continuation are well-known generic approaches to global optimization. Deterministic continuation is computationally attractive but produ...
Marc C. Robini, Isabelle E. Magnin