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RECOMB
1998
Springer
13 years 9 months ago
On reconstructing species trees from gene trees in term of duplications and losses
This paper studies various properties of the least common ancestors mapping, the duplication and mutation costs, and the complexity of nding a species tree from gene trees.
Bin Ma, Ming Li, Louxin Zhang
SIAMCOMP
2000
90views more  SIAMCOMP 2000»
13 years 4 months ago
From Gene Trees to Species Trees
This paper studies various algorithmic issues in reconstructing a species tree from gene trees under the duplication and the mutation cost model. This is a fundamental problem in c...
Bin Ma, Ming Li, Louxin Zhang
RECOMB
2009
Springer
14 years 5 months ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk
RECOMB
2010
Springer
13 years 2 months ago
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
(Motivation) Tree reconciliation is an approach that explains the discrepancies between two evolutionary trees by a number of events such as speciations, duplications, transfers an...
Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Go...
ISAAC
1998
Springer
99views Algorithms» more  ISAAC 1998»
13 years 9 months ago
On the Multiple Gene Duplication Problem
Abstract. A fundamental problem in computational biology is the determination of the correct species tree for a set of taxa given a set of possibly contradictory gene trees. In rec...
Michael R. Fellows, Michael T. Hallett, Ulrike Ste...