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» On the Complexity of Positional Sequencing by Hybridization
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CPM
1999
Springer
99views Combinatorics» more  CPM 1999»
13 years 9 months ago
On the Complexity of Positional Sequencing by Hybridization
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
DAM
2006
106views more  DAM 2006»
13 years 4 months ago
Computational complexity of isothermic DNA sequencing by hybridization
In the paper, the computational complexity of several variants of the problem of isothermic DNA sequencing by hybridization, is analyzed. The isothermic sequencing is a recent met...
Jacek Blazewicz, Marta Kasprzak
GECCO
2004
Springer
105views Optimization» more  GECCO 2004»
13 years 10 months ago
An Enhanced Genetic Algorithm for DNA Sequencing by Hybridization with Positive and Negative Errors
Abstract. This paper describes a genetic algorithm for the DNA sequencing problem. The algorithm allows the input spectrum to contain both positive and negative errors as could be ...
Thang Nguyen Bui, Waleed A. Youssef
HEURISTICS
2002
146views more  HEURISTICS 2002»
13 years 4 months ago
Hybrid Genetic Algorithm for DNA Sequencing with Errors
In the paper, a new hybrid genetic algorithm solving the DNA sequencing problem with negative and positive errors is presented. The algorithm has as its input a set of oligonucleo...
Jacek Blazewicz, Marta Kasprzak, Wojciech Kuroczyc...
COLT
2001
Springer
13 years 9 months ago
Intrinsic Complexity of Learning Geometrical Concepts from Positive Data
Intrinsic complexity is used to measure the complexity of learning areas limited by broken-straight lines (called open semi-hulls) and intersections of such areas. Any strategy le...
Sanjay Jain, Efim B. Kinber