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» On the Similarity of Sets of Permutations and Its Applicatio...
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PSB
2003
13 years 7 months ago
MAP: Searching Large Genome Databases
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Tamer Kahveci, Ambuj K. Singh
BMCBI
2007
115views more  BMCBI 2007»
13 years 5 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
ALT
2010
Springer
13 years 7 months ago
Contrast Pattern Mining and Its Application for Building Robust Classifiers
: The ability to distinguish, differentiate and contrast between different data sets is a key objective in data mining. Such ability can assist domain experts to understand their d...
Kotagiri Ramamohanarao
BMCBI
2006
161views more  BMCBI 2006»
13 years 5 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 11 days ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...