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IPL
2007
89views more  IPL 2007»
13 years 4 months ago
On the longest path algorithm for reconstructing trees from distance matrices
Culberson and Rudnicki [1] gave an algorithm that reconstructs a degree d restricted tree from its distance matrix. According to their analysis, it runs in time O(dn logd n) for t...
Lev Reyzin, Nikhil Srivastava
BMCBI
2006
137views more  BMCBI 2006»
13 years 4 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
IPPS
1998
IEEE
13 years 9 months ago
NC Algorithms for the Single Most Vital Edge Problem with Respect to All Pairs Shortest Paths
For a weighted, undirected graph G = V;E where jVj = n and jEj = m, we examine the single most vital edge with respect to two measurements related to all-pairs shortest paths APSP....
Sven Venema, Hong Shen, Francis Suraweera
ALGORITHMICA
1999
99views more  ALGORITHMICA 1999»
13 years 4 months ago
Evolutionary Trees and Ordinal Assertions
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Paul E. Kearney, Ryan Hayward, Henk Meijer
CORR
2007
Springer
165views Education» more  CORR 2007»
13 years 4 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...