Culberson and Rudnicki [1] gave an algorithm that reconstructs a degree d restricted tree from its distance matrix. According to their analysis, it runs in time O(dn logd n) for t...
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
For a weighted, undirected graph G = V;E where jVj = n and jEj = m, we examine the single most vital edge with respect to two measurements related to all-pairs shortest paths APSP....
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...