There are many critical situations when one needs to rapidly identify an unidentified pathogen from among a given set of previously sequenced pathogens. DNA or RNA hybridization c...
Dwarf is a highly compressed structure for computing, storing, and querying data cubes. Dwarf identifies prefix and suffix structural redundancies and factors them out by coalesci...
Yannis Sismanis, Antonios Deligiannakis, Nick Rous...
This paper presents an efficient way to construct the self-similarity matrix, a popular approach, to detect repeating segments in music. Our proposed method extends the sparse suf...
A variable-length code is a fix-free code if no codeword is a prefix or a suffix of any other codeword. In a fix-free code any finite sequence of codewords can be decoded in both d...
Given a set D = {d1, d2, ..., dD} of D strings of total length n, our task is to report the "most relevant" strings for a given query pattern P. This involves somewhat mo...