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CIBCB
2006
IEEE
13 years 11 months ago
Optimization of the Sliding Window Size for Protein Structure Prediction
- Sliding window based methods are relatively often applied in prediction of various aspects related to protein structure. Despite their wide spread use, researchers did not establ...
Ke Chen, Lukasz A. Kurgan, Jishou Ruan
CORR
2008
Springer
157views Education» more  CORR 2008»
13 years 5 months ago
The Imaginary Sliding Window As a New Data Structure for Adaptive Algorithms
Abstract.1 The scheme of the sliding window is known in Information Theory, Computer Science, the problem of predicting and in stastistics. Let a source with unknown statistics gen...
Boris Ryabko
JCB
2000
146views more  JCB 2000»
13 years 5 months ago
Bayesian Segmentation of Protein Secondary Structure
We present a novel method for predicting the secondary structure of a protein from its amino acid sequence. Most existing methods predict each position in turn based on a local wi...
Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag
DMKD
2003
ACM
110views Data Mining» more  DMKD 2003»
13 years 10 months ago
Weave amino acid sequences for protein secondary structure prediction
Given a known protein sequence, predicting its secondary structure can help understand its three-dimensional (tertiary) structure, i.e., the folding. In this paper, we present an ...
Xiaochun Yang, Bin Wang
BMCBI
2006
172views more  BMCBI 2006»
13 years 5 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...