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» Optimizing Multiple Spaced Seeds for Homology Search
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RECOMB
2004
Springer
14 years 5 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
ICALP
2005
Springer
13 years 10 months ago
Optimal Spaced Seeds for Faster Approximate String Matching
Filtering is a standard technique for fast approximate string matching in practice. In filtering, a quick first step is used to rule out almost all positions of a text as possib...
Martin Farach-Colton, Gad M. Landau, Süleyman...
CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
13 years 7 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
CVPR
2007
IEEE
14 years 7 months ago
Efficient Sampling of Disparity Space for Fast And Accurate Matching
A simple stereo matching algorithm is proposed that visits only a small fraction of disparity space in order to find a semi-dense disparity map. It works by growing from a small s...
Jan Cech, Radim Sára
ILP
2005
Springer
13 years 10 months ago
A Framework for Set-Oriented Computation in Inductive Logic Programming and Its Application in Generalizing Inverse Entailment
We propose a new approach to Inductive Logic Programming that systematically exploits caching and offers a number of advantages over current systems. It avoids redundant computati...
Héctor Corrada Bravo, David Page, Raghu Ram...