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BMCBI
2008
214views more  BMCBI 2008»
13 years 4 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2006
179views more  BMCBI 2006»
13 years 4 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
CLUSTER
2008
IEEE
13 years 11 months ago
Active CoordinaTion (ACT) - toward effectively managing virtualized multicore clouds
—A key benefit of utility data centers and cloud computing infrastructures is the level of consolidation they can offer to arbitrary guest applications, and the substantial savi...
Mukil Kesavan, Adit Ranadive, Ada Gavrilovska, Kar...
MICRO
2008
IEEE
113views Hardware» more  MICRO 2008»
13 years 11 months ago
From SODA to scotch: The evolution of a wireless baseband processor
With the multitude of existing and upcoming wireless standards, it is becoming increasingly difficult for hardware-only baseband processing solutions to adapt to the rapidly chan...
Mark Woh, Yuan Lin, Sangwon Seo, Scott A. Mahlke, ...
ICS
2010
Tsinghua U.
13 years 9 months ago
Streamlining GPU applications on the fly: thread divergence elimination through runtime thread-data remapping
Because of their tremendous computing power and remarkable cost efficiency, GPUs (graphic processing unit) have quickly emerged as an influential computing platform for a broad ...
Eddy Z. Zhang, Yunlian Jiang, Ziyu Guo, Xipeng She...