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LPNMR
2009
Springer
13 years 10 months ago
Computing Weighted Solutions in Answer Set Programming
For some problems with many solutions, like planning and phylogeny reconstruction, one way to compute more desirable solutions is to assign weights to solutions, and then pick the ...
Duygu Çakmak, Esra Erdem, Halit Erdogan
WABI
2005
Springer
128views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event
Abstract. The haplotype inference (HI) problem is the problem of inferring 2n haplotype pairs from n observed genotype vectors. This is a key problem that arises in studying geneti...
Yun S. Song, Yufeng Wu, Dan Gusfield
IPPS
2007
IEEE
13 years 11 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...
HPCC
2005
Springer
13 years 10 months ago
Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood
Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan...
CPM
2004
Springer
145views Combinatorics» more  CPM 2004»
13 years 10 months ago
Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs
The perfect phylogeny model for haplotype evolution has been successfully applied to haplotype resolution from genotype data. In this study we explore the application of the perfe...
Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, It...