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DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
13 years 10 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold
DNA
2005
Springer
144views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Designing Nucleotide Sequences for Computation: A Survey of Constraints
We survey the biochemical constraints useful for the design of DNA code words for DNA computation. We define the DNA/RNA Code Constraint problem and cover biochemistry topics rel...
Jennifer A. Sager, Darko Stefanovic
BIRTHDAY
2004
Springer
13 years 10 months ago
Writing Information into DNA
The time is approaching when information can be written into DNA. This tutorial work surveys the methods for designing code words using DNA, and proposes a simple code that avoids ...
Masanori Arita
ICALP
2005
Springer
13 years 10 months ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller
DNA
2006
Springer
13 years 8 months ago
Hairpin Structures Defined by DNA Trajectories
We examine scattered hairpins, which are structures formed when a single strand of nucleotides folds into a partially hybridized stem and a loop. To specify different classes of h...
Michael Domaratzki