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BMCBI
2008
139views more  BMCBI 2008»
13 years 5 months ago
New challenges for text mining: mapping between text and manually curated pathways
Background: Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the identification of th...
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okan...
CHI
2008
ACM
14 years 6 months ago
Intelligent object group selection
Current object group selection techniques such as lasso or rectangle selection can be time consuming and error prone. This is apparent when selecting distant objects on a large di...
Hoda Dehmeshki, Wolfgang Stürzlinger
NAR
2000
118views more  NAR 2000»
13 years 5 months ago
The EcoCyc and MetaCyc databases
EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signaltransduction pathways of Escherichia coli, its enzymes, and--a new addition--its tran...
Peter D. Karp, Monica Riley, Milton H. Saier Jr., ...
NAR
2007
95views more  NAR 2007»
13 years 5 months ago
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
With the integration of the KEGG and Predictome databases as well as two search engines for coexpressed genes/proteins using data sets obtained from the Stanford Microarray Databa...
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan C...
LREC
2008
66views Education» more  LREC 2008»
13 years 7 months ago
Connecting Text Mining and Pathways using the PathText Resource
Many systems have been developed in the past few years to assist researchers in the discovery of knowledge published as English text, for example in the PubMed database. At the sa...
Rune Sætre, Brian Kemper, Kanae Oda, Naoaki ...