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» Pathway-based analysis using reduced gene subsets in genome-...
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NAR
2011
188views Computer Vision» more  NAR 2011»
12 years 7 months ago
NCBI Epigenomics: a new public resource for exploring epigenomic data sets
The Epigenomics database at the National Center for Biotechnology Information (NCBI) is a new resource that has been created to serve as a comprehensive public resource for whole-...
Ian M. Fingerman, Lee McDaniel, Xuan Zhang, Walter...
BMCBI
2010
165views more  BMCBI 2010»
13 years 5 months ago
Filtering, FDR and power
Background: In high-dimensional data analysis such as differential gene expression analysis, people often use filtering methods like fold-change or variance filters in an attempt ...
Maarten van Iterson, Judith M. Boer, Renée ...
IPPS
2007
IEEE
13 years 11 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
RECOMB
2002
Springer
14 years 5 months ago
Inferring Piecewise Ancestral History from Haploid Sequences
There has been considerable recent interest in the use of haplotype structure to aid in the design and analysis of case-control association studies searching for genetic predictors...
Russell Schwartz, Andrew G. Clark, Sorin Istrail
BMCBI
2005
94views more  BMCBI 2005»
13 years 4 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel