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» Pattern Matching in Degenerate DNA RNA Sequences
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CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
13 years 9 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
CSB
2004
IEEE
103views Bioinformatics» more  CSB 2004»
13 years 9 months ago
Identifying MicroRNAs in Plant Genomes
The ability to control gene expression during development in plants could be used for improving crop yields, resistance to disease, and environmental adaptability. It has been sug...
Christopher Maher, Marja Timmermans, Lincoln Stein...
BIOINFORMATICS
2007
126views more  BIOINFORMATICS 2007»
13 years 5 months ago
A 3D pattern matching algorithm for DNA sequences
Joan Hérisson, Guillaume Payen, Rachid Gher...
BMCBI
2006
116views more  BMCBI 2006»
13 years 5 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
13 years 11 months ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga