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» Pattern Tree Algebras: Sets or Sequences
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SIGMOD
2004
ACM
156views Database» more  SIGMOD 2004»
14 years 6 months ago
Tree Logical Classes for Efficient Evaluation of XQuery
XML is widely praised for its flexibility in allowing repeated and missing sub-elements. However, this flexibility makes it challenging to develop a bulk algebra, which typically ...
Stelios Paparizos, Yuqing Wu, Laks V. S. Lakshmana...
AAAI
1997
13 years 7 months ago
Representing Sequences in Description Logics
This paper describes an approach for representing and manipulating sequences in description logics (DLs). The key idea is to represent sequences using sux trees, then represent t...
Haym Hirsh, Daniel Kudenko
IS
2010
13 years 4 months ago
Tree pattern mining with tree automata constraints
Most work on pattern mining focuses on simple data structures such as itemsets and sequences of itemsets. However, a lot of recent applications dealing with complex data like chem...
Sandra de Amo, Nyara A. Silva, Ronaldo P. Silva, F...
BMCBI
2010
155views more  BMCBI 2010»
13 years 3 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
BIBM
2009
IEEE
113views Bioinformatics» more  BIBM 2009»
13 years 9 months ago
Fast Motif Selection for Biological Sequences
—We consider the problem of identifying motifs, recurring or conserved patterns, in the sets of biological sequences. To solve this task, we present new deterministic and exact a...
Pavel P. Kuksa, Vladimir Pavlovic