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» Patterns of simple gene assembly in ciliates
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TCS
2008
13 years 5 months ago
Sequential vs. parallel complexity in simple gene assembly
We investigate some differences between the general intramolecular model for gene assembly and its restricted simple model. Although both models satisfactorily sort all current ex...
Miika Langille, Ion Petre
IANDC
2008
213views more  IANDC 2008»
13 years 5 months ago
Decision problem for shuffled genes
We consider a permutation-based model for the gene assembly process in ciliates. We give a procedure to decide whether a given micronuclear molecules may be assembled by using onl...
Ion Petre, Vladimir Rogojin
DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
13 years 11 months ago
Solutions to Computational Problems Through Gene Assembly
Abstract. Gene assembly in ciliates is an impressive computational process. Ciliates have a unique way of storing their genetic information in two fundamentally different forms wi...
Artiom Alhazov, Ion Petre, Vladimir Rogojin
FCT
2007
Springer
13 years 11 months ago
A String-Based Model for Simple Gene Assembly
Abstract. The simple intramolecular model for gene assembly in ciliates is particularly interesting because it can predict the correct assembly of all available experimental data, ...
Robert Brijder, Miika Langille, Ion Petre
BMCBI
2006
142views more  BMCBI 2006»
13 years 5 months ago
Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with
Background: Common fragile sites (cfs) are specific regions in the human genome that are particularly prone to genomic instability under conditions of replicative stress. Several ...
Angela Re, Davide Corà, Alda Maria Puliti, ...