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» Performance Measurements and Analysis of the BlueGene L MPI ...
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SC
2004
ACM
13 years 10 months ago
A Performance and Scalability Analysis of the BlueGene/L Architecture
This paper is structured as follows. Section 2 gives an architectural description of BlueGene/L. Section 3 analyzes the issue of “computational noise” – the effect that the o...
Kei Davis, Adolfy Hoisie, Greg Johnson, Darren J. ...
IPPS
2006
IEEE
13 years 11 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
EUROPAR
2003
Springer
13 years 10 months ago
Obtaining Hardware Performance Metrics for the BlueGene/L Supercomputer
Hardware performance monitoring is the basis of modern performance analysis tools for application optimization. We are interested in providing such performance analysis tools for t...
Pedro Mindlin, José R. Brunheroto, Luiz De ...
CF
2007
ACM
13 years 9 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
SPAA
2006
ACM
13 years 11 months ago
Astronomical real-time streaming signal processing on a Blue Gene/L supercomputer
LOFAR is the first of a new generation of radio telescopes, that combines the signals from many thousands of simple, fixed antennas, rather than from expensive dishes. Its revol...
John W. Romein, P. Chris Broekema, Ellen van Meije...