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APBC
2008
238views Bioinformatics» more  APBC 2008»
13 years 6 months ago
Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes
Krister M. Swenson, William Arndt, Jijun Tang, Ber...
CSB
2005
IEEE
182views Bioinformatics» more  CSB 2005»
13 years 10 months ago
Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance
Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
Noppadon Khiripet
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang
BMCBI
2006
137views more  BMCBI 2006»
13 years 4 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
BIBE
2004
IEEE
13 years 8 months ago
Phylogenetic Reconstruction from Arbitrary Gene-Order Data
Phylogenetic reconstruction from gene-order data has attracted attention from both biologists and computer scientists over the last few years. So far, our software suite GRAPPA is...
Jijun Tang, Bernard M. E. Moret, Liying Cui, Claud...