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» Physics-based simulation of biological structures
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ANSS
2006
IEEE
13 years 11 months ago
Simulation and Analysis of Complex Biological Processes: an Organisation Modelling Perspective
This paper explores how the dynamics of complex biological processes can be modelled and simulated as an organisation of multiple agents. This modelling perspective identifies org...
Tibor Bosse, Catholijn M. Jonker, Jan Treur
COMPGEOM
2007
ACM
13 years 9 months ago
Computing the exact arrangement of circles on a sphere, with applications in structural biology: video
The Bentley-Ottmann (BO) algorithm, initially designed to report the intersection points of line-segments in the plane, is the prototypical sweep-line algorithm. This video presen...
Frédéric Cazals, Sébastien Lo...
ACRI
2006
Springer
13 years 11 months ago
CA Simulation of Biological Evolution in Genetic Hyperspace
Abstract. Realistic simulation of biological evolution by necessity requires simplification and reduction in the dimensionality of the corresponding dynamic system. Even when this...
Michael A. Saum, Sergey Gavrilets
CIBCB
2007
IEEE
13 years 11 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...