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» Piers: An Efficient Model for Similarity Search in DNA Seque...
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BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
13 years 10 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
SIGMOD
2005
ACM
178views Database» more  SIGMOD 2005»
14 years 5 months ago
Towards Effective Indexing for Very Large Video Sequence Database
With rapid advances in video processing technologies and ever fast increments in network bandwidth, the popularity of video content publishing and sharing has made similarity sear...
Heng Tao Shen, Beng Chin Ooi, Xiaofang Zhou
KDD
2005
ACM
137views Data Mining» more  KDD 2005»
14 years 5 months ago
Pattern-based similarity search for microarray data
One fundamental task in near-neighbor search as well as other similarity matching efforts is to find a distance function that can efficiently quantify the similarity between two o...
Haixun Wang, Jian Pei, Philip S. Yu
BMCBI
2008
211views more  BMCBI 2008»
13 years 4 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
SIGPRO
2008
104views more  SIGPRO 2008»
13 years 4 months ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi