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» Polyphonic Musical Sequence Alignment for Database Search
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IPPS
2003
IEEE
13 years 11 months ago
Using Hybrid Alignment for Iterative Sequence Database Searches
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...
Yuheng Li, Mario Lauria, Ralf Bundschuh
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
13 years 11 months ago
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Yuheng Li, Mario Lauria, Ralf Bundschuh
BMCBI
2011
12 years 9 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
DATESO
2007
157views Database» more  DATESO 2007»
13 years 7 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
JCDL
2009
ACM
154views Education» more  JCDL 2009»
14 years 8 days ago
An alignment based system for chord sequence retrieval
Music retrieval systems for Western tonal music digital libraries have to consider rhythmic, timbral, melodic and harmonic information. Most existing retrieval systems only take i...
Pierre Hanna, Matthias Robine, Thomas Rocher